Last updated: 2022-04-05

Checks: 2 0

Knit directory: hesc-epigenomics/

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Rmd 5c3a499 C. Navarro 2022-04-05 wflow_publish(“./analysis/index.Rmd”)
html 5eb1b01 C. Navarro 2022-02-04 Build site.
Rmd 21ed358 C. Navarro 2022-02-04 Index update
html d495eb3 C. Navarro 2021-09-10 Build site.
Rmd 909edd6 C. Navarro 2021-09-10 wflow_publish(“./analysis/index.Rmd”)
html 8363fcf C. Navarro 2021-07-09 Build site.
html 87db6b2 C. Navarro 2021-07-09 Build site.
Rmd d7e28c0 C. Navarro 2021-07-09 wflow_publish(“./analysis/index.Rmd”, verbose = T)
html ce48d0f C. Navarro 2021-07-08 Build site.
Rmd 2d5c9aa C. Navarro 2021-07-08 wflow_publish(“./analysis/index.Rmd”, verbose = T)
html 9e8b1a9 cnluzon 2021-05-26 Metadata folder added
Rmd 0f37941 cnluzon 2021-03-12 Fig1 fresh
html 0f37941 cnluzon 2021-03-12 Fig1 fresh
Rmd ef20c53 cnluzon 2021-03-11 Annotations
html ef20c53 cnluzon 2021-03-11 Annotations
html aa434ad cnluzon 2021-02-08 Per chromosome density report
Rmd eb48856 cnluzon 2021-02-08 wflow_publish(“analysis/”)
html 0437358 cnluzon 2021-02-07 Build site.
Rmd 8942fdf cnluzon 2021-02-07 Index page
html 8942fdf cnluzon 2021-02-07 Index page
Rmd 0481b52 cnluzon 2021-02-05 RNA seq first analysis
html 0481b52 cnluzon 2021-02-05 RNA seq first analysis
Rmd 87ff15f cnluzon 2021-02-05 Renamed read counts file
html 87ff15f cnluzon 2021-02-05 Renamed read counts file
html 7cafaa1 cnluzon 2021-02-03 Build site.
Rmd 930c015 cnluzon 2021-02-03 wflow_publish(“analysis/”)
html 331f00c cnluzon 2021-02-03 Build site.
Rmd 04408d2 cnluzon 2021-02-03 Global read counts
Rmd 897ecf5 cnluzon 2021-02-02 wflow_git_commit(all = TRUE)
Rmd 407fa20 cnluzon 2021-02-02 Start workflowr project.

Supplementary code for publication. A large proportion of the figures shown in this publication can be obtained directly from values in the main tables.

Publication figures

Supplementary data and analyses

Main data files

Raw data

Raw data can be obtained at GEO database: GSE181244.

Main tables and analysis can be generated running this code. Primary processed and scaled bigWig files and metadata including a pre-generated version of such tables can be found here. They should be put under data/ in the same directory where the repository was cloned.

See GitHub repository for more information about software requirements. This website was generated using workflowr, an R package for science reproducibility.